librsb
1.2.0.11
|
The reference documentation of the librsb
library comes in both HTML and Unix man pages formats. The following sections/man pages are available: The librsb library interface (rsb.h, rsb.F90) ; The Sparse BLAS interface to librsb (blas_sparse.h, rsb_blas_sparse.F90) ; Example programs and code.
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Macros | |
#define | RSB_SIZEOF(TYPE) RSB_NUMERICAL_TYPE_SIZE(TYPE) |
Functions | |
rsb_err_t | rsb_lib_init (struct rsb_initopts *iop) |
rsb_err_t | rsb_lib_set_opt_str (const rsb_char_t *opnp, const rsb_char_t *opvp) |
rsb_err_t | rsb_lib_reinit (struct rsb_initopts *iop) |
rsb_err_t | rsb_lib_exit (struct rsb_initopts *iop) |
struct rsb_mtx_t * | rsb_mtx_alloc_from_coo_const (const void *VA, const rsb_coo_idx_t *IA, const rsb_coo_idx_t *JA, rsb_nnz_idx_t nnzA, rsb_type_t typecode, rsb_coo_idx_t nrA, rsb_coo_idx_t ncA, rsb_blk_idx_t brA, rsb_blk_idx_t bcA, rsb_flags_t flagsA, rsb_err_t *errvalp) |
struct rsb_mtx_t * | rsb_mtx_alloc_from_coo_inplace (void *VA, rsb_coo_idx_t *IA, rsb_coo_idx_t *JA, rsb_nnz_idx_t nnzA, rsb_type_t typecode, rsb_coo_idx_t nrA, rsb_coo_idx_t ncA, rsb_blk_idx_t brA, rsb_blk_idx_t bcA, rsb_flags_t flagsA, rsb_err_t *errvalp) |
struct rsb_mtx_t * | rsb_mtx_free (struct rsb_mtx_t *mtxAp) |
rsb_err_t | rsb_mtx_clone (struct rsb_mtx_t **mtxBpp, rsb_type_t typecode, rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_flags_t flags) |
rsb_err_t | rsb_spmv (rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, const void *Xp, rsb_coo_idx_t incX, const void *betap, void *Yp, rsb_coo_idx_t incY) |
rsb_err_t | rsb_spsv (rsb_trans_t transT, const void *alphap, const struct rsb_mtx_t *mtxTp, const void *Xp, rsb_coo_idx_t incX, void *Yp, rsb_coo_idx_t incY) |
rsb_err_t | rsb_spsm (rsb_trans_t transT, const void *alphap, const struct rsb_mtx_t *mtxTp, rsb_coo_idx_t nrhs, rsb_flags_t order, const void *betap, const void *Bp, rsb_nnz_idx_t ldB, void *Cp, rsb_nnz_idx_t ldC) |
rsb_err_t | rsb_coo_sort (void *VA, rsb_coo_idx_t *IA, rsb_coo_idx_t *JA, rsb_nnz_idx_t nnzA, rsb_coo_idx_t nrA, rsb_coo_idx_t ncA, rsb_type_t typecode, rsb_flags_t flagsA) |
rsb_err_t | rsb_file_mtx_get_dims (const char *filename, rsb_coo_idx_t *nrp, rsb_coo_idx_t *ncp, rsb_coo_idx_t *nzp, rsb_flags_t *flagsp) |
rsb_err_t | rsb_perror (void *stream, rsb_err_t errval) |
rsb_err_t | rsb_strerror_r (rsb_err_t errval, rsb_char_t *buf, size_t buflen) |
rsb_err_t | rsb_mtx_upd_vals (struct rsb_mtx_t *mtxAp, enum rsb_elopf_t elop_flags, const void *omegap) |
rsb_err_t | rsb_mtx_set_vals (struct rsb_mtx_t *mtxAp, const void *VA, const rsb_coo_idx_t *IA, const rsb_coo_idx_t *JA, rsb_nnz_idx_t nnz, rsb_flags_t flags) |
rsb_err_t | rsb_mtx_get_vals (const struct rsb_mtx_t *mtxAp, void *VA, const rsb_coo_idx_t *IA, const rsb_coo_idx_t *JA, rsb_nnz_idx_t nnz, rsb_flags_t flags) |
rsb_err_t | rsb_file_mtx_save (const struct rsb_mtx_t *mtxAp, const rsb_char_t *filename) |
rsb_err_t | rsb_file_vec_save (const rsb_char_t *filename, rsb_type_t typecode, const void *Yp, rsb_coo_idx_t yvl) |
rsb_err_t | rsb_file_vec_load (const rsb_char_t *filename, rsb_type_t typecode, void *Yp, rsb_coo_idx_t *yvlp) |
struct rsb_mtx_t * | rsb_file_mtx_load (const rsb_char_t *filename, rsb_flags_t flagsA, rsb_type_t typecode, rsb_err_t *errvalp) |
struct rsb_mtx_t * | rsb_sppsp (rsb_type_t typecode, rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_trans_t transB, const void *betap, const struct rsb_mtx_t *mtxBp, rsb_err_t *errvalp) |
struct rsb_mtx_t * | rsb_spmsp (rsb_type_t typecode, rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_trans_t transB, const void *betap, const struct rsb_mtx_t *mtxBp, rsb_err_t *errvalp) |
rsb_err_t | rsb_mtx_add_to_dense (const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_nnz_idx_t ldB, rsb_nnz_idx_t nrB, rsb_nnz_idx_t ncB, rsb_bool_t rowmajorB, void *Bp) |
rsb_trans_t | rsb_psblas_trans_to_rsb_trans (const char psbtrans) |
struct rsb_mtx_t * | rsb_mtx_alloc_from_csr_const (const void *VA, const rsb_coo_idx_t *RP, const rsb_coo_idx_t *JA, rsb_nnz_idx_t nnzA, rsb_type_t typecode, rsb_coo_idx_t nrA, rsb_coo_idx_t ncA, rsb_blk_idx_t brA, rsb_blk_idx_t bcA, rsb_flags_t flagsA, rsb_err_t *errvalp) |
struct rsb_mtx_t * | rsb_mtx_alloc_from_csc_const (const void *VA, const rsb_coo_idx_t *IA, const rsb_coo_idx_t *CP, rsb_nnz_idx_t nnzA, rsb_type_t typecode, rsb_coo_idx_t nrA, rsb_coo_idx_t ncA, rsb_blk_idx_t brA, rsb_blk_idx_t bcA, rsb_flags_t flagsA, rsb_err_t *errvalp) |
struct rsb_mtx_t * | rsb_mtx_alloc_from_csr_inplace (void *VA, rsb_nnz_idx_t *RP, rsb_coo_idx_t *JA, rsb_nnz_idx_t nnzA, rsb_type_t typecode, rsb_coo_idx_t nrA, rsb_coo_idx_t ncA, rsb_blk_idx_t brA, rsb_blk_idx_t bcA, rsb_flags_t flagsA, rsb_err_t *errvalp) |
rsb_err_t | rsb_mtx_switch_to_csr (struct rsb_mtx_t *mtxAp, void **VAp, rsb_coo_idx_t **IAp, rsb_coo_idx_t **JAp, rsb_flags_t flags) |
rsb_err_t | rsb_mtx_get_coo (const struct rsb_mtx_t *mtxAp, void *VA, rsb_coo_idx_t *IA, rsb_coo_idx_t *JA, rsb_flags_t flags) |
rsb_err_t | rsb_mtx_get_csr (rsb_type_t typecode, const struct rsb_mtx_t *mtxAp, void *VA, rsb_nnz_idx_t *RP, rsb_coo_idx_t *JA, rsb_flags_t flags) |
rsb_err_t | rsb_mtx_get_rows_sparse (rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, void *VA, rsb_coo_idx_t *IA, rsb_coo_idx_t *JA, rsb_coo_idx_t frA, rsb_coo_idx_t lrA, rsb_nnz_idx_t *rnzp, rsb_flags_t flags) |
rsb_err_t | rsb_mtx_get_coo_block (const struct rsb_mtx_t *mtxAp, void *VA, rsb_coo_idx_t *IA, rsb_coo_idx_t *JA, rsb_coo_idx_t frA, rsb_coo_idx_t lrA, rsb_coo_idx_t fcA, rsb_coo_idx_t lcA, const rsb_coo_idx_t *IREN, const rsb_coo_idx_t *JREN, rsb_nnz_idx_t *rnzp, rsb_flags_t flags) |
rsb_err_t | rsb_spmm (rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_coo_idx_t nrhs, rsb_flags_t order, const void *Bp, rsb_nnz_idx_t ldB, const void *betap, void *Cp, rsb_nnz_idx_t ldC) |
rsb_err_t | rsb_spmsp_to_dense (rsb_type_t typecode, rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_trans_t transB, const void *betap, const struct rsb_mtx_t *mtxBp, rsb_nnz_idx_t ldC, rsb_nnz_idx_t nrC, rsb_nnz_idx_t ncC, rsb_bool_t rowmajorC, void *Cp) |
rsb_err_t | rsb_mtx_rndr (const char *filename, const struct rsb_mtx_t *mtxAp, rsb_coo_idx_t pmWidth, rsb_coo_idx_t pmHeight, rsb_marf_t rflags) |
rsb_err_t | rsb_file_mtx_rndr (void *pmp, const char *filename, rsb_coo_idx_t pmlWidth, rsb_coo_idx_t pmWidth, rsb_coo_idx_t pmHeight, rsb_marf_t rflags) |
rsb_err_t | rsb_mtx_switch_to_coo (struct rsb_mtx_t *mtxAp, void **VAp, rsb_coo_idx_t **IAp, rsb_coo_idx_t **JAp, rsb_flags_t flags) |
rsb_err_t | rsb_mtx_get_prec (void *opdp, const struct rsb_mtx_t *mtxAp, rsb_precf_t prec_flags, const void *ipdp) |
rsb_err_t | rsb_mtx_get_info (const struct rsb_mtx_t *mtxAp, enum rsb_mif_t miflags, void *minfop) |
rsb_err_t | rsb_mtx_get_info_str (const struct rsb_mtx_t *mtxAp, const rsb_char_t *mis, void *minfop, size_t buflen) |
rsb_err_t | rsb_mtx_get_nrm (const struct rsb_mtx_t *mtxAp, void *Np, enum rsb_extff_t flags) |
rsb_err_t | rsb_mtx_get_vec (const struct rsb_mtx_t *mtxAp, void *Dp, enum rsb_extff_t flags) |
rsb_time_t | rsb_time (void) |
rsb_err_t | rsb_tune_spmm (struct rsb_mtx_t **mtxOpp, rsb_real_t *sfp, rsb_int_t *tnp, rsb_int_t maxr, rsb_time_t maxt, rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_coo_idx_t nrhs, rsb_flags_t order, const void *Bp, rsb_nnz_idx_t ldB, const void *betap, void *Cp, rsb_nnz_idx_t ldC) |
rsb_err_t | rsb_tune_spsm (struct rsb_mtx_t **mtxOpp, rsb_real_t *sfp, rsb_int_t *tnp, rsb_int_t maxr, rsb_time_t maxt, rsb_trans_t transA, const void *alphap, const struct rsb_mtx_t *mtxAp, rsb_coo_idx_t nrhs, rsb_flags_t order, const void *Bp, rsb_nnz_idx_t ldB, const void *betap, void *Cp, rsb_nnz_idx_t ldC) |
The reference documentation of the librsb
library comes in both HTML and Unix man pages formats. The following sections/man pages are available: The librsb library interface (rsb.h, rsb.F90) ; The Sparse BLAS interface to librsb (blas_sparse.h, rsb_blas_sparse.F90) ; Example programs and code.
In general, users of this library are interested in high performance sparse matrix computations on cache based shared memory parallel computers. For this, librsb
offers a native C interface (here documented) and a Fortran one (in rsb.F90, equivalent to the C declaration headers from rsb.h), in addition to a the Sparse BLAS one (both C and Fortran, documented).
Configuration, build, and installation instructions are contained in the README
file distributed in the sources archive.
Typical program structure
librsb
with rsb_lib_init() librsb
with rsb_lib_exit()Important usage notes
General program structure Before calling any librsb
function, a program is required to initialize librsb's
internal status. This is done by calling rsb_lib_init() . Afterwards, any librsb
function can be safely used. When librsb
functions are not intended to be called anymore, a program may call rsb_lib_exit() to free any resource. Then, rsb_lib_init() should be called for further usage of librsb
.
Manipulating matrices and vectors In order to use librsb
, the user is not required to use explicitly any of librsb's
data structures: their manipulation is to be performed by librsb
functions. Therefore, knowledge of librsb's
matrix type (rsb_mtx_t
) is not necessary at all: this structure is intended to be used as an opaque container.
On the contrary, arrays for numerical vectors (or more generally, dense matrices) are expected to be managed by the user: librsb
does not furnish any specific vector type. Computational functions treat dense vectors/matrices are simple arrays of a specified type; see the Example programs and code .
Computational functions This library can be configured at build time to support a custom subset of numerical types. To keep the programming interface compact, it has been decided to not replicate the computational functions to each numerical type. Instead, the type is expected to be specified by the user via a type flag. For instance, matrix assembly functions (e.g.: rsb_mtx_alloc_from_coo_const() ) accept a type information and keep it stored in the matrix structure. Therefore, computational functions (e.g.: rsb_spmv() ) can fetch this information from their rsb_mtx_t
operand, and treat accordingly the other parameters (e.g.: alphap, Xp, ...). Mixed type operations are currently not supported.
Memory management
Matrix structures (rsb_mtx_t
) allocated by librsb
shall be freed only via rsb_mtx_free() .
Benchmarking
If you want to benchmark this library, there are different possibilities:
Tuning and Customization
There are different ./configure options you may look at for tuning or customizing the library.
#define RSB_SIZEOF | ( | TYPE | ) | RSB_NUMERICAL_TYPE_SIZE(TYPE) |
Use RSB_SIZEOF macro to get the size (in bytes) of a type supported by the library (e.g.: when allocating numerical vectors).
enum rsb_elopf_t |
Flags for specifying a particular elemental/row-wise operation with rsb_mtx_upd_vals().
Enumerator | |
---|---|
RSB_ELOPF_MUL | Elemental multiplication of the matrix by a specified scalar (usable with rsb_mtx_upd_vals(), binary operation). |
RSB_ELOPF_DIV | Elemental division by a specified scalar (usable with rsb_mtx_upd_vals(), binary operation). |
RSB_ELOPF_POW | Elemental power to a specified scalar (usable with rsb_mtx_upd_vals(), binary operation). |
RSB_ELOPF_NEG | Elemental negation (usable with rsb_mtx_upd_vals(), unary operation). |
RSB_ELOPF_SCALE_ROWS | Row wise scaling by a specified scaling vector (usable with rsb_mtx_upd_vals(), binary operation). |
RSB_ELOPF_SCALE_COLS | Column wise scaling by a specified scaling vector (usable with rsb_mtx_upd_vals(), binary operation). |
RSB_ELOPF_SCALE_ROWS_REAL | Row wise scaling by a specified scaling vector. If matrix is of a complex type, the argument is expected to be of the corresponding real type (assumed that that type has been enabled). (usable with rsb_mtx_upd_vals(), binary operation). |
RSB_ELOPF_SCALE_COLS_REAL | Column wise scaling by a specified scaling vector. If matrix is of a complex type, the argument is expected to be of the corresponding real type (assumed that that type has been enabled). (usable with rsb_mtx_upd_vals(), binary operation). |
enum rsb_extff_t |
Extraction filter flags, to be used with rsb_mtx_get_nrm()/rsb_mtx_get_vec().
Enumerator | |
---|---|
RSB_EXTF_NORM_ONE | rsb_mtx_get_nrm() flag value for computing the one-norm. |
RSB_EXTF_NORM_TWO | rsb_mtx_get_nrm() flag value for computing the two-norm (Frobenius norm). |
RSB_EXTF_NORM_INF | rsb_mtx_get_nrm() flag value for computing the infinity-norm. |
RSB_EXTF_SUMS_ROW | rsb_mtx_get_vec() flag value for computing the sum along each row. |
RSB_EXTF_SUMS_COL | rsb_mtx_get_vec() flag value for computing the sum along each column. |
RSB_EXTF_ASUMS_ROW | rsb_mtx_get_vec() flag value for computing the absolute values sum, along each row. |
RSB_EXTF_ASUMS_COL | rsb_mtx_get_vec() flag value for computing the absolute values sum, along each column. |
RSB_EXTF_DIAG | rsb_mtx_get_vec() flag value for extracting the diagonal submatrix. |
enum rsb_mif_t |
Flags for getting matrix information via rsb_mtx_get_info()/rsb_mtx_get_info_str().
Enumerator | |
---|---|
RSB_MIF_INDEX_STORAGE_IN_BYTES__TO__SIZE_T | Index storage occupation, in bytes. (size_t) |
RSB_MIF_INDEX_STORAGE_IN_BYTES_PER_NNZ__TO__RSB_REAL_T | Index storage occupation per nnz, in bytes. (rsb_real_t) |
RSB_MIF_MATRIX_ROWS__TO__RSB_COO_INDEX_T | Rows count(rsb_coo_idx_t) |
RSB_MIF_MATRIX_COLS__TO__RSB_COO_INDEX_T | Columns count (rsb_coo_idx_t) |
RSB_MIF_MATRIX_NNZ__TO__RSB_NNZ_INDEX_T | Nonzeroes count (rsb_nnz_idx_t) |
RSB_MIF_TOTAL_SIZE__TO__SIZE_T | Total size, in bytes (size_t) |
RSB_MIF_MATRIX_FLAGS__TO__RSB_FLAGS_T | Matrix flags (rsb_flags_t) |
RSB_MIF_MATRIX_TYPECODE__TO__RSB_TYPE_T | Matrix type code (rsb_type_t) |
RSB_MIF_MATRIX_INFO__TO__CHAR_P | Matrix info string, only for rsb_mtx_get_info_str() (rsb_char_t*) |
RSB_MIF_LEAVES_COUNT__TO__RSB_BLK_INDEX_T | Leaf submatrices count (rsb_blk_idx_t) |
enum rsb_opt_t |
library option values for rsb_lib_init, rsb_lib_set_opt_str, rsb_lib_reinit, rsb_lib_exit, rsb_lib_get_opt, rsb_lib_set_opt, or (deprecated) macros RSB_REINIT_SINGLE_VALUE_GET, RSB_REINIT_SINGLE_VALUE_SET, RSB_REINIT_SINGLE_VALUE, RSB_REINIT_SINGLE_VALUE_C_IOP..
Enumerator | |
---|---|
RSB_IO_WANT_VERBOSE_INIT | RSB_IO_WANT_VERBOSE_INIT prompts for a verbose initialization of the library: messages will be written to the file descriptor ( |
RSB_IO_WANT_VERBOSE_EXIT | RSB_IO_WANT_VERBOSE_EXIT prompts for a verbose finalization of the library: messages will be written to the file descriptor ( |
RSB_IO_WANT_OUTPUT_STREAM | Specifies the default output stream. Output (debug info) info will be written to the file descriptor ( |
RSB_IO_WANT_SORT_METHOD | Specifies the default sorting method. Specified as a pointed integer (rsb_int_t) number, in {[0],1}. (internal) |
RSB_IO_WANT_CACHE_BLOCKING_METHOD | Specifies the default cache blocking method. Specified as a pointed integer (rsb_int_t) number, in {-1,[0],1}. (internal) |
RSB_IO_WANT_SUBDIVISION_MULTIPLIER | Specifies a multiplier for finer (if >1.0) or coarser (if <1.0) subdivisions. Specified as a pointed (rsb_real_t) number, in {..,[1.0],..}. (internal) |
RSB_IO_WANT_VERBOSE_ERRORS | Prompts for a verbose error reporting: messages will be written to the file descriptor ( |
RSB_IO_WANT_BOUNDED_BOX_COMPUTATION | Prompts for bounded box computation, for a smoother submatrices locking; pointed rsb_int_t in {0,[1]}. (internal). |
RSB_IO_WANT_EXECUTING_THREADS | Specifies the number of desired executing threads; pointed rsb_int_t in {[0],1,..}. |
RSB_IO_WANT_EXTRA_VERBOSE_INTERFACE | Specifies the level of interface verbosity; if setting, pointed rsb_int_t values should be in {[0],1,..}. Support may be enabled or disabled at build time via the |
RSB_IO_WANT_MEMORY_HIERARCHY_INFO_STRING | Specifies a custom memory hierarchy info string; pointed |
RSB_IO_WANT_IS_INITIALIZED_MARKER | Used for getting whether the library has been initialized (RSB_BOOL_TRUE) or not (RSB_BOOL_FALSE) ; pointed |
RSB_IO_WANT_MEM_ALLOC_CNT | Used for getting the count of memory allocations performed by librsb employing librsb's memory allocation wrapper (if disabled, will return zero); pointed |
RSB_IO_WANT_MEM_ALLOC_TOT | Used for getting the total amount of memory allocated by librsb employing librsb's memory allocation wrapper (if disabled, will return zero); pointed |
RSB_IO_WANT_LEAF_LEVEL_MULTIVEC | Specifies whether the default multi-vector ops shall act at a leaf level (default value of 0 is yes). Specified as a pointed integer (rsb_int_t) number, in {-1,[0]}. (internal) |
RSB_IO_WANT_MAX_MEMORY_ALLOCATIONS | Specifies an upper limit to the count of allocated memory areas (default value of 0 means no limit). Specified as a pointed |
RSB_IO_WANT_MAX_MEMORY_ALLOCATED | Specifies an upper limit to the amount of allocated memory (default value of 0 means no limit). Specified as a pointed |
RSB_IO_WANT_LIBRSB_ETIME | Represents time spent in librsb. Specified as a pointed rsb_time_t. Only works if statistics collection ( |
RSB_IO_WANT_VERBOSE_TUNING | Auto tuning verbosity level for rsb_tune_spmm/rsb_tune_spsm. If 0, no verbosity; if 1, verbose; if 2, verbose with trace files being dumped. |
rsb_err_t rsb_coo_sort | ( | void * | VA, |
rsb_coo_idx_t * | IA, | ||
rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnzA, | ||
rsb_coo_idx_t | nrA, | ||
rsb_coo_idx_t | ncA, | ||
rsb_type_t | typecode, | ||
rsb_flags_t | flagsA | ||
) |
Sorts row-major the given COO input arrays representing a sparse matrix .
VA,IA,JA | Output numerical values (VA ) array; output row (IA ) and column (JA ) indices arrays. |
nnzA | The number of nonzeroes in the input arrays representing matrix . |
nrA,ncA | The number of rows and columns of the sparse matrix . |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
flagsA | A valid combination of matrix storage flags. If unsure, use RSB_FLAG_NOFLAGS. |
IA
and JA
(and swapping nrA
and ncA
as well) one can obtain column major order.rsb_err_t rsb_file_mtx_get_dims | ( | const char * | filename, |
rsb_coo_idx_t * | nrp, | ||
rsb_coo_idx_t * | ncp, | ||
rsb_coo_idx_t * | nzp, | ||
rsb_flags_t * | flagsp | ||
) |
Reads structural information (dimensions, structural flags) for a matrix file into user specified (and optionally NULL
) variables.
filename | The specified matrix file name (cannot be NULL ). |
nrp,ncp | Output pointers to rows and columns count variables (can be NULL ). |
nzp | Output pointer to the nonzeroes count variable (can be NULL ). |
flagsp | Output pointer to the detected structural flags variable. Will be a combination of RSB_FLAG_LOWER, RSB_FLAG_UPPER, RSB_FLAG_SYMMETRIC, RSB_FLAG_HERMITIAN. |
%%MatrixMarket matrix coordinate real symmetric % % A Hilbert Matrix of order 3, so with 3 rows, 3 columns, and 6 nonzeroes. % 3 3 6 1 1 1.0 2 1 0.5 2 2 0.33 3 1 0.33 3 2 0.25 3 3 0.2In the above example header on the first line, you can specify either
real
or complex
or pattern
for the numerical type. Either general
, symmetric
, hermitian
can be specified for the structure. In case of pattern
matrices, only coordinate indices will be loaded (saving pattern
matrices is not yet supported); in case of real
matrices, also one coefficient value will be saved/loaded; in the case of complex
matrices, both the real and imaginary parts will be saved/loaded in addition to the indices. struct rsb_mtx_t* rsb_file_mtx_load | ( | const rsb_char_t * | filename, |
rsb_flags_t | flagsA, | ||
rsb_type_t | typecode, | ||
rsb_err_t * | errvalp | ||
) |
Loads a sparse matrix from the specified matrix file, assembling it in the format specified by flags, using the numerical type representation as specified by the user.
filename | The specified matrix file name (cannot be NULL ). |
flagsA | A valid combination of matrix storage flags. |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
.%%MatrixMarket matrix coordinate real symmetric % % A Hilbert Matrix of order 3, so with 3 rows, 3 columns, and 6 nonzeroes. % 3 3 6 1 1 1.0 2 1 0.5 2 2 0.33 3 1 0.33 3 2 0.25 3 3 0.2In the above example header on the first line, you can specify either
real
or complex
or pattern
for the numerical type. Either general
, symmetric
, hermitian
can be specified for the structure. In case of pattern
matrices, only coordinate indices will be loaded (saving pattern
matrices is not yet supported); in case of real
matrices, also one coefficient value will be saved/loaded; in the case of complex
matrices, both the real and imaginary parts will be saved/loaded in addition to the indices. rsb_err_t rsb_file_mtx_rndr | ( | void * | pmp, |
const char * | filename, | ||
rsb_coo_idx_t | pmlWidth, | ||
rsb_coo_idx_t | pmWidth, | ||
rsb_coo_idx_t | pmHeight, | ||
rsb_marf_t | rflags | ||
) |
Renders as pixel map the matrix contained in a matrix file.
pmp | Pixel map array pointer. |
filename | The specified matrix file name (cannot be NULL ). |
pmlWidth | stride between lines (in pixels; no less than pmWidth ). |
pmWidth | Pixel map width (in pixels or points). |
pmHeight | Pixel map height (in pixels or points). |
rflags | The color mode; only RSB_MARF_RGB is supported for now (1 byte per channel, 3 channels — red, green, blue): this requires array pmp to be at least (3*pmlWidth* bytes large. |
pmlWidth
is required to be equal to pmWidth
. rsb_err_t rsb_file_mtx_save | ( | const struct rsb_mtx_t * | mtxAp, |
const rsb_char_t * | filename | ||
) |
Saves the given matrix to the specified matrix file.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
filename | The specified output file name (if NULL , will write to standard output). |
%%MatrixMarket matrix coordinate real symmetric % % A Hilbert Matrix of order 3, so with 3 rows, 3 columns, and 6 nonzeroes. % 3 3 6 1 1 1.0 2 1 0.5 2 2 0.33 3 1 0.33 3 2 0.25 3 3 0.2In the above example header on the first line, you can specify either
real
or complex
or pattern
for the numerical type. Either general
, symmetric
, hermitian
can be specified for the structure. In case of pattern
matrices, only coordinate indices will be loaded (saving pattern
matrices is not yet supported); in case of real
matrices, also one coefficient value will be saved/loaded; in the case of complex
matrices, both the real and imaginary parts will be saved/loaded in addition to the indices.rsb_err_t rsb_file_vec_load | ( | const rsb_char_t * | filename, |
rsb_type_t | typecode, | ||
void * | Yp, | ||
rsb_coo_idx_t * | yvlp | ||
) |
Loads a dense vector from the specified file, using the numerical type representation as specified by the user. This function is intended to be called in two steps: first with Yp=NULL
, in order to write the vector length to *yvlp
; then, with yvlp=NULL
, to get Yp
written.
filename | The specified vector file name (cannot be NULL ). |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
Yp | The input array vector. |
yvlp | An optional pointer (can be NULL ). If supplied, vector length will be written here, and no vector will be read. |
%%MatrixMarket matrix array complex general 6 1 11.000000000000000E+000 12.000000000000000E+000 21.000000000000000E+000 22.000000000000000E+000 31.000000000000000E+000 32.000000000000000E+000 41.000000000000000E+000 42.000000000000000E+000 51.000000000000000E+000 52.000000000000000E+000 61.000000000000000E+000 62.000000000000000E+000In the above example header on the first line, you can specify either
real
or complex
or pattern
for the numerical type. rsb_err_t rsb_file_vec_save | ( | const rsb_char_t * | filename, |
rsb_type_t | typecode, | ||
const void * | Yp, | ||
rsb_coo_idx_t | yvl | ||
) |
Saves a dense vector to the specified file, using the numerical type representation as specified by the user. This function assumes Yp!=NULL
and yvl>0
.
filename | The specified vector file name (cannot be NULL ). |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
Yp | The output array vector. |
yvl | Output vector length. |
%%MatrixMarket matrix array complex general 6 1 11.000000000000000E+000 12.000000000000000E+000 21.000000000000000E+000 22.000000000000000E+000 31.000000000000000E+000 32.000000000000000E+000 41.000000000000000E+000 42.000000000000000E+000 51.000000000000000E+000 52.000000000000000E+000 61.000000000000000E+000 62.000000000000000E+000In the above example header on the first line, you can specify either
real
or complex
or pattern
for the numerical type. rsb_err_t rsb_lib_exit | ( | struct rsb_initopts * | iop | ) |
Finalize librsb
.
rsb_lib_exit should be called after having freed all matrices.
If not all of the data structures were properly deallocated before, this function may still attempt finalizing the library and return the RSB_ERR_MEMORY_LEAK error code (this depends on the –enable-allocator-wrapper
configure time option). Any allocated memory will be lost (librsb
does not keep track of allocated matrices).
Internal library state will be cleared. After this call, it is legal to initialize the library again, by calling rsb_lib_init().
On an error, the library state may be inconsistent, so it is advisable to either terminate program execution (rather than forcing a new initialization with rsb_lib_init()).
Parameter iop
is reserved for future use; for now it is safe to pass RSB_NULL_EXIT_OPTIONS.
iop | A pointer to a rsb_initopts structure with library options. It may be NULL (or better, RSB_NULL_INIT_OPTIONS/RSB_NULL_EXIT_OPTIONS) for specifying default options. |
rsb_err_t rsb_lib_init | ( | struct rsb_initopts * | iop | ) |
This is the library initialization function.
It must be called only once before using any other library function.
It is allowed to call it again after rsb_lib_exit().
To fine-tune the library behaviour, one may specify a number of options via the iop
parameter.
Options may be specified also after rsb_lib_init() by calling rsb_lib_reinit().
One may call RSB_REINIT_SINGLE_VALUE_GET with flag RSB_IO_WANT_IS_INITIALIZED_MARKER to verify whether the library has been initialized or not.
iop | A pointer to a rsb_initopts structure with library options. It may be NULL (or better, RSB_NULL_INIT_OPTIONS/RSB_NULL_EXIT_OPTIONS) for specifying default options. |
rsb_err_t rsb_lib_reinit | ( | struct rsb_initopts * | iop | ) |
Changes the library operation options which were set at initialization time either by a user or as defaults.
Not all options may be supported, depending on build time library settings.
If an unsupported option was specified, an appropriate error (e.g.: RSB_ERR_UNSUPPORTED_OPERATION) will be returned.
On the first error, option processing is interrupted and the remaining options (if any) are not processed.
Program execution may continue safely even if an error code is returned (that is, library status should be consistent).
iop | A pointer to a rsb_initopts structure with library options. It may be NULL (or better, RSB_NULL_INIT_OPTIONS/RSB_NULL_EXIT_OPTIONS) for specifying default options. |
rsb_err_t rsb_lib_set_opt_str | ( | const rsb_char_t * | opnp, |
const rsb_char_t * | opvp | ||
) |
Specifies individual library options in order to fine-tune the library behaviour. Both the option name and the value shall be expressed as strings, identical to their preprocessor identifiers (see rsb_opt_t ). The opnp
string will be translated internally to the corresponding request flag values, and the passed value will be parsed out of the opvp
string.
opnp | A pointer to a library option input name string (may not be NULL ). |
opvp | A pointer to a library option input value string (may not be NULL ). |
rsb_err_t rsb_mtx_add_to_dense | ( | const void * | alphap, |
const struct rsb_mtx_t * | mtxAp, | ||
rsb_nnz_idx_t | ldB, | ||
rsb_nnz_idx_t | nrB, | ||
rsb_nnz_idx_t | ncB, | ||
rsb_bool_t | rowmajorB, | ||
void * | Bp | ||
) |
Dense matrix B is updated by adding scaled sparse matrix to it:
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
ldB | Leading dimension of Bp array. |
nrB,ncB | The number of rows and columns for the dense matrix . |
rowmajorB | RSB_BOOL_TRUE if the dense matrix is considered stored as row major, or RSB_BOOL_FALSE if as column major. |
Bp | Array representing the dense matrix . |
Bp's
description parameters to get transposed summed in. struct rsb_mtx_t* rsb_mtx_alloc_from_coo_const | ( | const void * | VA, |
const rsb_coo_idx_t * | IA, | ||
const rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnzA, | ||
rsb_type_t | typecode, | ||
rsb_coo_idx_t | nrA, | ||
rsb_coo_idx_t | ncA, | ||
rsb_blk_idx_t | brA, | ||
rsb_blk_idx_t | bcA, | ||
rsb_flags_t | flagsA, | ||
rsb_err_t * | errvalp | ||
) |
Given as input COO arrays VA
,IA,JA, allocates and assembles an RSB matrix using separate arrays.
VA,IA,JA | Input numerical values (VA ) array; row (IA ) and column (JA ) input indices arrays. |
nnzA | The number of nonzeroes in the input arrays representing matrix . |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
nrA,ncA | The number of rows and columns of the sparse matrix . |
brA,bcA | Blocking parameters: brA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use); bcA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use). |
flagsA | A valid combination of index conversion and matrix storage flags and other meaningful flags. The encouraged base choice here is RSB_FLAG_DEFAULT_RSB_MATRIX_FLAGS. If Fortran (1 based) indices are being used for the IA, JA arrays, then the RSB_FLAG_FORTRAN_INDICES_INTERFACE flag should be added. If symmetric storage is desired, then RSB_FLAG_SYMMETRIC (or RSB_FLAG_HERMITIAN, for Hermitian matrices) is necessary, in combination with either RSB_FLAG_LOWER or RSB_FLAG_UPPER. If you intend to use this matrix for triangular solution (e.g.: rsb_spsv()/rsb_spsm()), it needs to be triangular and specified with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR, and not have RSB_FLAG_LOWER_SYMMETRIC or RSB_FLAG_LOWER_HERMITIAN. Nonzeroes non complying with the specified flags will be ignored. If RSB_FLAG_UNIT_DIAG_IMPLICIT is present, diagonal entries will be not represented but assumed to be unitary. If RSB_FLAG_DUPLICATES_SUM is present, duplicate entries will be summed together. If RSB_FLAG_DISCARD_ZEROS is present, zeroes will be discarded. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
. struct rsb_mtx_t* rsb_mtx_alloc_from_coo_inplace | ( | void * | VA, |
rsb_coo_idx_t * | IA, | ||
rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnzA, | ||
rsb_type_t | typecode, | ||
rsb_coo_idx_t | nrA, | ||
rsb_coo_idx_t | ncA, | ||
rsb_blk_idx_t | brA, | ||
rsb_blk_idx_t | bcA, | ||
rsb_flags_t | flagsA, | ||
rsb_err_t * | errvalp | ||
) |
Given as input COO arrays VA
,IA,JA, allocates and assembles an RSB matrix reusing input arrays.
Assumes all three VA
,IA,JA arrays are at least max(nnzA
,nrA+1
,ncA+1
) sized. The user is expected NOT to use these arrays until the matrix has been destroyed with rsb_mtx_free(). Then, it is possible to use these arrays again.
VA,IA,JA | Input/output numerical values array (VA ); row (IA ) and column (JA ) indices arrays. |
nnzA | The number of nonzeroes in the input arrays representing matrix . |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
nrA,ncA | The number of rows and columns of the sparse matrix . |
brA,bcA | Blocking parameters: brA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use); bcA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use). |
flagsA | A valid combination of index conversion and matrix storage flags and other meaningful flags. The encouraged base choice here is RSB_FLAG_DEFAULT_RSB_MATRIX_FLAGS. If Fortran (1 based) indices are being used for the IA, JA arrays, then the RSB_FLAG_FORTRAN_INDICES_INTERFACE flag should be added. If symmetric storage is desired, then RSB_FLAG_SYMMETRIC (or RSB_FLAG_HERMITIAN, for Hermitian matrices) is necessary, in combination with either RSB_FLAG_LOWER or RSB_FLAG_UPPER. If you intend to use this matrix for triangular solution (e.g.: rsb_spsv()/rsb_spsm()), it needs to be triangular and specified with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR, and not have RSB_FLAG_LOWER_SYMMETRIC or RSB_FLAG_LOWER_HERMITIAN. Nonzeroes non complying with the specified flags will be ignored. If RSB_FLAG_UNIT_DIAG_IMPLICIT is present, diagonal entries will be not represented but assumed to be unitary. If RSB_FLAG_DUPLICATES_SUM is present, duplicate entries will be summed together. If RSB_FLAG_DISCARD_ZEROS is present, zeroes will be discarded. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
.struct rsb_mtx_t* rsb_mtx_alloc_from_csc_const | ( | const void * | VA, |
const rsb_coo_idx_t * | IA, | ||
const rsb_coo_idx_t * | CP, | ||
rsb_nnz_idx_t | nnzA, | ||
rsb_type_t | typecode, | ||
rsb_coo_idx_t | nrA, | ||
rsb_coo_idx_t | ncA, | ||
rsb_blk_idx_t | brA, | ||
rsb_blk_idx_t | bcA, | ||
rsb_flags_t | flagsA, | ||
rsb_err_t * | errvalp | ||
) |
Given input read only CSC format arrays, allocates and assembles an RSB matrix (stored in separate arrays).
VA,IA,CP | Input numerical values (VA ) array, input row indices (IA ) and compressed column (CP ) indices arrays. |
nnzA | The number of nonzeroes in the input arrays representing matrix . |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
nrA,ncA | The number of rows and columns of the sparse matrix . |
brA,bcA | Blocking parameters: brA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use); bcA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use). |
flagsA | A valid combination of index conversion and matrix storage flags and other meaningful flags. The encouraged base choice here is RSB_FLAG_DEFAULT_RSB_MATRIX_FLAGS. If Fortran (1 based) indices are being used for the IA, JA arrays, then the RSB_FLAG_FORTRAN_INDICES_INTERFACE flag should be added. If symmetric storage is desired, then RSB_FLAG_SYMMETRIC (or RSB_FLAG_HERMITIAN, for Hermitian matrices) is necessary, in combination with either RSB_FLAG_LOWER or RSB_FLAG_UPPER. If you intend to use this matrix for triangular solution (e.g.: rsb_spsv()/rsb_spsm()), it needs to be triangular and specified with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR, and not have RSB_FLAG_LOWER_SYMMETRIC or RSB_FLAG_LOWER_HERMITIAN. Nonzeroes non complying with the specified flags will be ignored. If RSB_FLAG_UNIT_DIAG_IMPLICIT is present, diagonal entries will be not represented but assumed to be unitary. If RSB_FLAG_DUPLICATES_SUM is present, duplicate entries will be summed together. If RSB_FLAG_DISCARD_ZEROS is present, zeroes will be discarded. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
. struct rsb_mtx_t* rsb_mtx_alloc_from_csr_const | ( | const void * | VA, |
const rsb_coo_idx_t * | RP, | ||
const rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnzA, | ||
rsb_type_t | typecode, | ||
rsb_coo_idx_t | nrA, | ||
rsb_coo_idx_t | ncA, | ||
rsb_blk_idx_t | brA, | ||
rsb_blk_idx_t | bcA, | ||
rsb_flags_t | flagsA, | ||
rsb_err_t * | errvalp | ||
) |
Given input read only CSR format arrays, allocates and assembles an RSB matrix (stored in separate arrays).
VA,RP,JA | Input numerical values (VA ) array; compressed rows (RP ) and column (JA ) input indices arrays. |
nnzA | The number of nonzeroes in the input arrays representing matrix . |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
nrA,ncA | The number of rows and columns of the sparse matrix . |
brA,bcA | Blocking parameters: brA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use); bcA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use). |
flagsA | A valid combination of index conversion and matrix storage flags and other meaningful flags. The encouraged base choice here is RSB_FLAG_DEFAULT_RSB_MATRIX_FLAGS. If Fortran (1 based) indices are being used for the IA, JA arrays, then the RSB_FLAG_FORTRAN_INDICES_INTERFACE flag should be added. If symmetric storage is desired, then RSB_FLAG_SYMMETRIC (or RSB_FLAG_HERMITIAN, for Hermitian matrices) is necessary, in combination with either RSB_FLAG_LOWER or RSB_FLAG_UPPER. If you intend to use this matrix for triangular solution (e.g.: rsb_spsv()/rsb_spsm()), it needs to be triangular and specified with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR, and not have RSB_FLAG_LOWER_SYMMETRIC or RSB_FLAG_LOWER_HERMITIAN. Nonzeroes non complying with the specified flags will be ignored. If RSB_FLAG_UNIT_DIAG_IMPLICIT is present, diagonal entries will be not represented but assumed to be unitary. If RSB_FLAG_DUPLICATES_SUM is present, duplicate entries will be summed together. If RSB_FLAG_DISCARD_ZEROS is present, zeroes will be discarded. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
. struct rsb_mtx_t* rsb_mtx_alloc_from_csr_inplace | ( | void * | VA, |
rsb_nnz_idx_t * | RP, | ||
rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnzA, | ||
rsb_type_t | typecode, | ||
rsb_coo_idx_t | nrA, | ||
rsb_coo_idx_t | ncA, | ||
rsb_blk_idx_t | brA, | ||
rsb_blk_idx_t | bcA, | ||
rsb_flags_t | flagsA, | ||
rsb_err_t * | errvalp | ||
) |
Given as input CSR arrays VA
,RP,JA , allocates and assembles an RSB matrix reusing input arrays.
Assumes all three VA
,IA,JA arrays are at least max(nnzA
,nrA+1
,ncA+1
) sized. The user is expected NOT to use these arrays until the matrix has been destroyed with rsb_mtx_free(). Then, it is possible to use these arrays again.
VA,RP,JA | Input numerical values (VA ) array; compressed rows (RP ) and column (JA ) input indices arrays. Will not be freed by rsb_mtx_free(). |
nnzA | The number of nonzeroes in the input arrays representing matrix . |
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
nrA,ncA | The number of rows and columns of the sparse matrix . |
brA,bcA | Blocking parameters: brA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use); bcA should be set to 1 or RSB_DEFAULT_ROW_BLOCKING (currently unused, reserved for future use). |
flagsA | A valid combination of index conversion and matrix storage flags and other meaningful flags. The encouraged base choice here is RSB_FLAG_DEFAULT_RSB_MATRIX_FLAGS. If Fortran (1 based) indices are being used for the IA, JA arrays, then the RSB_FLAG_FORTRAN_INDICES_INTERFACE flag should be added. If symmetric storage is desired, then RSB_FLAG_SYMMETRIC (or RSB_FLAG_HERMITIAN, for Hermitian matrices) is necessary, in combination with either RSB_FLAG_LOWER or RSB_FLAG_UPPER. If you intend to use this matrix for triangular solution (e.g.: rsb_spsv()/rsb_spsm()), it needs to be triangular and specified with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR, and not have RSB_FLAG_LOWER_SYMMETRIC or RSB_FLAG_LOWER_HERMITIAN. Nonzeroes non complying with the specified flags will be ignored. If RSB_FLAG_UNIT_DIAG_IMPLICIT is present, diagonal entries will be not represented but assumed to be unitary. If RSB_FLAG_DUPLICATES_SUM is present, duplicate entries will be summed together. If RSB_FLAG_DISCARD_ZEROS is present, zeroes will be discarded. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
. rsb_err_t rsb_mtx_clone | ( | struct rsb_mtx_t ** | mtxBpp, |
rsb_type_t | typecode, | ||
rsb_trans_t | transA, | ||
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_flags_t | flags | ||
) |
This function clones a given matrix, allocating a fresh data structure or overwriting an existing one.
Target type (specified by typecode
) can be different from that in the matrix.
If alphap=NULL
, the cloned matrix will not be scaled.
This new structure will be completely separated and independent from the original one.
Examples:
mtxBpp | Valid rsb_mtx_t pointer to an address for matrix . If *mtxBpp==NULL , a fresh clone will be assigned there; if not, the existing matrix structure will be freed and allocated to host the new one. The case *mtxBpp==mtxAp is supported. |
typecode | A valid type code for the desired output matrix (see matrix_type_symbols_section). |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value for scaling the output. Of the type code of mtxAp . |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
flags | Either RSB_FLAG_IDENTICAL_FLAGS or a combination of other flags, e.g.: RSB_FLAG_C_INDICES_INTERFACE, RSB_FLAG_SYMMETRIC, RSB_FLAG_HERMITIAN, RSB_FLAG_TRIANGULAR, RSB_FLAG_UPPER, RSB_FLAG_LOWER, RSB_FLAG_UNIT_DIAG_IMPLICIT, RSB_FLAG_DISCARD_ZEROS. Flag RSB_FLAG_EXTERNALLY_ALLOCATED_ARRAYS is forbidden. Flag RSB_FLAG_FORTRAN_INDICES_INTERFACE is ignored. |
struct rsb_mtx_t* rsb_mtx_free | ( | struct rsb_mtx_t * | mtxAp | ) |
Frees a previously allocated sparse matrix structure.
In the case the matrix has the RSB_FLAG_EXTERNALLY_ALLOCATED_ARRAYS flag, the main three data arrays VA,IA,JA will not be freed by rsb_mtx_free (see rsb_mtx_alloc_from_coo_inplace,rsb_mtx_alloc_from_csr_inplace).
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
NULL
.rsb_err_t rsb_mtx_get_coo | ( | const struct rsb_mtx_t * | mtxAp, |
void * | VA, | ||
rsb_coo_idx_t * | IA, | ||
rsb_coo_idx_t * | JA, | ||
rsb_flags_t | flags | ||
) |
Returns the matrix converted in a coordinate storage format.
Elements will be stored in no particular order.
If there are structural or fill-in zero elements, these will be skipped.
Writes as many entries as there are nonzeroes (use rsb_mtx_get_info(mtxAp,RSB_MIF_MATRIX_NNZ__TO__RSB_NNZ_INDEX_T,&nnz)) to find out how many in order to allocate the arrays correctly.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VA,IA,JA | Output numerical values (VA ) array; output row (IA ) and column (JA ) indices arrays. |
flags | Either RSB_FLAG_FORTRAN_INDICES_INTERFACE or RSB_FLAG_C_INDICES_INTERFACE (see flags_section flags section). |
rsb_err_t rsb_mtx_get_coo_block | ( | const struct rsb_mtx_t * | mtxAp, |
void * | VA, | ||
rsb_coo_idx_t * | IA, | ||
rsb_coo_idx_t * | JA, | ||
rsb_coo_idx_t | frA, | ||
rsb_coo_idx_t | lrA, | ||
rsb_coo_idx_t | fcA, | ||
rsb_coo_idx_t | lcA, | ||
const rsb_coo_idx_t * | IREN, | ||
const rsb_coo_idx_t * | JREN, | ||
rsb_nnz_idx_t * | rnzp, | ||
rsb_flags_t | flags | ||
) |
Writes in COO format the specified submatrix. Works in two stages: first the user invokes it with VA
,IA,JA set to NULL
to get *rnzp
. Then the VA
,IA,JA arrays can be allocated, and the function called again, this time with rnzp=NULL
but the VA
,IA,JA arrays pointers non NULL
(or at least, one of them).
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VA,IA,JA | Output numerical values (VA ) array; output row (IA ) and column (JA ) indices arrays. |
frA,lrA | First and last row indices. |
fcA,lcA | First and last column indices. |
IREN,JREN | Renumbering arrays for IA and JA (respectively rows count and columns count sized). If NULL , no renumbering will be used. |
rnzp | A pointer where the number of relevant nonzero elements will be written to. |
flags | Either RSB_FLAG_FORTRAN_INDICES_INTERFACE or RSB_FLAG_C_INDICES_INTERFACE (see flags_section flags section). |
Examples:
rsb_err_t rsb_mtx_get_csr | ( | rsb_type_t | typecode, |
const struct rsb_mtx_t * | mtxAp, | ||
void * | VA, | ||
rsb_nnz_idx_t * | RP, | ||
rsb_coo_idx_t * | JA, | ||
rsb_flags_t | flags | ||
) |
Fills the given arrays with the matrix expressed in the CSR format.
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VA,RP,JA | Output numerical values (VA ) array, compressed row indices (RP ) and column indices (JA ) arrays. |
flags | Either RSB_FLAG_FORTRAN_INDICES_INTERFACE or RSB_FLAG_C_INDICES_INTERFACE (see flags_section flags section). |
rsb_err_t rsb_mtx_get_info | ( | const struct rsb_mtx_t * | mtxAp, |
enum rsb_mif_t | miflags, | ||
void * | minfop | ||
) |
Returns a specified matrix (numerical) property.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
miflags | A valid value of matrix info flags (see rsb_mif_t for valid values). |
minfop | Pointer to a variable of the right type, according to the matrix info flag specification (see rsb_mif_t). |
rsb_err_t rsb_mtx_get_info_str | ( | const struct rsb_mtx_t * | mtxAp, |
const rsb_char_t * | mis, | ||
void * | minfop, | ||
size_t | buflen | ||
) |
Returns a specified matrix (numerical) property, via a string form query.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
mis | A string specifying any identifier among the matrix info ones. See rsb_mif_t for a list of valid identifiers that can be supplied in string form. |
minfop | Pointer to a variable of the right type, according to the matrix info flag specification (see rsb_mif_t). |
buflen | If greater than 0, minfop will be treated as a string of length buflen and filled with the desired value via the standard snprintf() function. |
rsb_err_t rsb_mtx_get_nrm | ( | const struct rsb_mtx_t * | mtxAp, |
void * | Np, | ||
enum rsb_extff_t | flags | ||
) |
Computes a matrix norm (either infinite-norm or or 2-norm or 1-norm).
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
Np | Points to a scalar value which will be overwritten with the selected norm. |
flags | Either RSB_EXTF_NORM_ONE or RSB_EXTF_NORM_TWO or RSB_EXTF_NORM_INF. |
In case of a complex type, only the real part will be written to Np
.
rsb_err_t rsb_mtx_get_prec | ( | void * | opdp, |
const struct rsb_mtx_t * | mtxAp, | ||
rsb_precf_t | prec_flags, | ||
const void * | ipdp | ||
) |
A function computing a simple preconditioner out of mtxAp
.
opdp | Preconditioner data pointer (output). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
prec_flags | Valid preconditioner request flags (currently, only RSB_PRECF_ILU0 is supported; for it, *opdp will be overwritten with two rsb_mtx_t pointers, respectively a lower and an upper matrix.). |
ipdp | Preconditioner data pointer (input). |
rsb_err_t rsb_mtx_get_rows_sparse | ( | rsb_trans_t | transA, |
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
void * | VA, | ||
rsb_coo_idx_t * | IA, | ||
rsb_coo_idx_t * | JA, | ||
rsb_coo_idx_t | frA, | ||
rsb_coo_idx_t | lrA, | ||
rsb_nnz_idx_t * | rnzp, | ||
rsb_flags_t | flags | ||
) |
Writes to the given COO arrays the specified submatrix.
Invoke with VA
,IA,JA set to NULL
in order to get the nonzeroes count written to *rnzp
, and know how large the arrays should be.
IA can be NULL
(in this case it will be ignored). The written rows are ordered.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VA,IA,JA | Output numerical values (VA ) array; input row (IA ) and column (JA ) indices arrays. |
frA,lrA | First and last row indices. |
rnzp | A pointer where the number of relevant nonzero elements will be written to. |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
flags | Either RSB_FLAG_FORTRAN_INDICES_INTERFACE or RSB_FLAG_C_INDICES_INTERFACE (see flags_section flags section). |
rsb_err_t rsb_mtx_get_vals | ( | const struct rsb_mtx_t * | mtxAp, |
void * | VA, | ||
const rsb_coo_idx_t * | IA, | ||
const rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnz, | ||
rsb_flags_t | flags | ||
) |
Gets the specified matrix elements, if found. Please note that unlike rsb_mtx_set_vals, the matrix has to be fully assembled here.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VA,IA,JA | Output numerical values (VA ) array; input row (IA ) and column (JA ) indices arrays. |
nnz | The number of nonzeroes in the input arrays. |
flags | Either RSB_FLAG_FORTRAN_INDICES_INTERFACE or RSB_FLAG_C_INDICES_INTERFACE (see flags_section flags section). |
rsb_err_t rsb_mtx_get_vec | ( | const struct rsb_mtx_t * | mtxAp, |
void * | Dp, | ||
enum rsb_extff_t | flags | ||
) |
Will overwrite a supplied array with a specific vector quantity.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
Dp | A valid pointer to a numerical vector array . |
flags | Either one of the different extraction filter flags (e.g.: RSB_EXTF_DIAG, RSB_EXTF_SUMS_ROW, ...) . |
rsb_err_t rsb_mtx_rndr | ( | const char * | filename, |
const struct rsb_mtx_t * | mtxAp, | ||
rsb_coo_idx_t | pmWidth, | ||
rsb_coo_idx_t | pmHeight, | ||
rsb_marf_t | rflags | ||
) |
Renders a matrix to a file. Currently, only Encapsulated Postscript (EPS) is supported.
filename | The specified output file name (if NULL , will write to standard output). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
pmWidth | Pixel map width (in pixels or points). |
pmHeight | Pixel map height (in pixels or points). |
rflags | The color mode; only RSB_MARF_RGB is supported for now (1 byte per channel, 3 channels — red, green, blue): this requires array pmp to be at least (3*pmlWidth* bytes large. |
rsb_err_t rsb_mtx_set_vals | ( | struct rsb_mtx_t * | mtxAp, |
const void * | VA, | ||
const rsb_coo_idx_t * | IA, | ||
const rsb_coo_idx_t * | JA, | ||
rsb_nnz_idx_t | nnz, | ||
rsb_flags_t | flags | ||
) |
Updates the specified matrix elements, if found in the nonzero pattern.
In the special case of a matrix in assembly state (that is, one that has been created as empty with rsb_mtx_alloc_from_coo_begin() and not yet assembled with rsb_mtx_alloc_from_coo_end() ) all the supplied matrix elements will be accepted: whether already present or not.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VA,IA,JA | Input numerical values (VA ) array; row (IA ) and column (JA ) input indices arrays. |
nnz | The number of nonzeroes in the input arrays. |
flags | Either RSB_FLAG_FORTRAN_INDICES_INTERFACE or RSB_FLAG_C_INDICES_INTERFACE plus either RSB_FLAG_DUPLICATES_SUM (to sum into) or RSB_FLAG_DUPLICATES_KEEP_LAST (to overwrite entries) (see flags_section flags section). |
rsb_err_t rsb_mtx_switch_to_coo | ( | struct rsb_mtx_t * | mtxAp, |
void ** | VAp, | ||
rsb_coo_idx_t ** | IAp, | ||
rsb_coo_idx_t ** | JAp, | ||
rsb_flags_t | flags | ||
) |
Switches a matrix to COO arrays in place.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VAp,IAp,JAp | Output numerical values (VAp ) array pointer; output row (IAp ) and column (JAp ) indices arrays pointers. |
flags | A combination of RSB_FLAG_C_INDICES_INTERFACE, RSB_FLAG_FORTRAN_INDICES_INTERFACE, RSB_FLAG_FORTRAN_INDICES_INTERFACE. (see flags_section flags section). |
mtxAp
has been assembled in place (that is, in the arrays that are being reclaimed), so with e.g.: rsb_mtx_alloc_from_coo_inplace(). Please also note that the matrix will get freed internally and so mtxAp
will not be usable in any way afterwards. rsb_err_t rsb_mtx_switch_to_csr | ( | struct rsb_mtx_t * | mtxAp, |
void ** | VAp, | ||
rsb_coo_idx_t ** | IAp, | ||
rsb_coo_idx_t ** | JAp, | ||
rsb_flags_t | flags | ||
) |
Switches the matrix to the CSR format, in-place.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
VAp,IAp,JAp | Output numerical values (VAp ) array pointer; output row (IAp ) and column (JAp ) indices arrays pointers. |
flags | A valid combination of index conversion flags (that is, RSB_FLAG_C_INDICES_INTERFACE and RSB_FLAG_FORTRAN_INDICES_INTERFACE) and other meaningful flags. Symmetry flags shall be the same as in the matrix in use, because symmetry expansion may happen otherwise. Flags RSB_FLAG_EXTERNALLY_ALLOCATED_ARRAYS are forbidden. |
mtxAp
has been assembled in place (that is, in the arrays that are being reclaimed), so with e.g.: rsb_mtx_alloc_from_coo_inplace(). Please also note that the matrix will get freed internally and so mtxAp
will not be usable in any way afterwards. rsb_err_t rsb_mtx_upd_vals | ( | struct rsb_mtx_t * | mtxAp, |
enum rsb_elopf_t | elop_flags, | ||
const void * | omegap | ||
) |
Updates the matrix by applying either a rowwise or an elemental operation , which is determined by elop_flags
. If an unary operation is selected, omegap
can be NULL
.
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
elop_flags | Elemental operation specification flags (see rsb_elopf_t for valid choices). |
omegap | Pointer to a numerical location(s) (of the same type as matrix). |
Prints out to the specified stream
a string corresponding to the error code (using <stdio.h>'s
fprintf
). If stream==NULL
, will print out to the default output stream; see RSB_IO_WANT_OUTPUT_STREAM .
stream | A (FILE*) pointer, as declared in <stdio.h> ; can be NULL . |
errval | A valid error flag value (see rsb_err_t). |
rsb_trans_t rsb_psblas_trans_to_rsb_trans | ( | const char | psbtrans | ) |
Translate a PSBLAS transposition value character to a librsb
one.
See the PSBLAS library website/documentation for valid input values.
psbtrans | Transposition parameter value valid in the PSBLAS library. |
rsb_err_t rsb_spmm | ( | rsb_trans_t | transA, |
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_coo_idx_t | nrhs, | ||
rsb_flags_t | order, | ||
const void * | Bp, | ||
rsb_nnz_idx_t | ldB, | ||
const void * | betap, | ||
void * | Cp, | ||
rsb_nnz_idx_t | ldC | ||
) |
Updates a dense matrix with the product of sparse matrix by dense matrix; that is, computes .
if transA=RSB_TRANSPOSITION_N
; if transA=RSB_TRANSPOSITION_T
; if transA=RSB_TRANSPOSITION_C
; If –enable-rsb-num-threads
has been specified at configure time, the RSB_NUM_THREADS
environment variable will override the number of executing threads specified by OMP_NUM_THREADS
. (See also RSB_IO_WANT_EXECUTING_THREADS). Setting order=RSB_FLAG_WANT_COLUMN_MAJOR_ORDER
with ldC=0
and ldB=0
implies 'compact' defaults, that is no extra stride between the columns.
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
nrhs | The number of right hand side vectors (cannot be <1 ). |
order | A flag among RSB_FLAG_WANT_COLUMN_MAJOR_ORDER and RSB_FLAG_WANT_ROW_MAJOR_ORDER. For contiguous vector arrays, you probably want RSB_FLAG_WANT_COLUMN_MAJOR_ORDER. |
Bp | The input vector array. |
ldB | Leading dimension of Bp array. |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
Cp | The output vector array. |
ldC | Leading dimension of Cp array. |
struct rsb_mtx_t* rsb_spmsp | ( | rsb_type_t | typecode, |
rsb_trans_t | transA, | ||
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_trans_t | transB, | ||
const void * | betap, | ||
const struct rsb_mtx_t * | mtxBp, | ||
rsb_err_t * | errvalp | ||
) |
Computes the weighted product of two sparse matrices in a new sparse matrix (also known as SpGEMM operation): Symmetry/Hermitian flags are ignored by this operation.
if transA=RSB_TRANSPOSITION_N
; if transA=RSB_TRANSPOSITION_T
; if transA=RSB_TRANSPOSITION_C
; if transB=RSB_TRANSPOSITION_N
; if transB=RSB_TRANSPOSITION_T
; if transB=RSB_TRANSPOSITION_C
;
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
transB | Transposition parameter for (see matrix_transposition_flags_section). |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
mtxBp | Valid rsb_mtx_t pointer to matrix representation. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
.alphap
,betap,transA,transB are not yet taken in consideration. The following defaults are valid: and , and transA=transB=RSB_TRANSPOSITION_N
.rsb_err_t rsb_spmsp_to_dense | ( | rsb_type_t | typecode, |
rsb_trans_t | transA, | ||
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_trans_t | transB, | ||
const void * | betap, | ||
const struct rsb_mtx_t * | mtxBp, | ||
rsb_nnz_idx_t | ldC, | ||
rsb_nnz_idx_t | nrC, | ||
rsb_nnz_idx_t | ncC, | ||
rsb_bool_t | rowmajorC, | ||
void * | Cp | ||
) |
Computes the product of sparse matrices and adds it to a dense matrix: .
if transA=RSB_TRANSPOSITION_N
; if transA=RSB_TRANSPOSITION_T
; if transA=RSB_TRANSPOSITION_C
; if transB=RSB_TRANSPOSITION_N
; if transB=RSB_TRANSPOSITION_T
; if transB=RSB_TRANSPOSITION_C
;
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
transB | Transposition parameter for (see matrix_transposition_flags_section). |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
mtxBp | Valid rsb_mtx_t pointer to matrix representation. |
ldC | Leading dimension of Cp array. |
nrC,ncC | The number of rows and columns for the dense matrix . |
rowmajorC | RSB_BOOL_TRUE if the dense matrix is considered stored as row major, or RSB_BOOL_FALSE if as column major. |
Cp | Array representing the dense matrix . |
alphap
,betap,transA,transB are not yet taken in consideration. The following defaults are valid: and , and transA=transB=RSB_TRANSPOSITION_N
.rsb_err_t rsb_spmv | ( | rsb_trans_t | transA, |
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
const void * | Xp, | ||
rsb_coo_idx_t | incX, | ||
const void * | betap, | ||
void * | Yp, | ||
rsb_coo_idx_t | incY | ||
) |
Multiplies a sparse matrix by a vector , updating vector .
Computes .
It is not allowed to supply same Xp
and Yp
(that is, Xp==Yp
).
if transA=RSB_TRANSPOSITION_N
; if transA=RSB_TRANSPOSITION_T
; if transA=RSB_TRANSPOSITION_C
; If –enable-rsb-num-threads
has been specified at configure time, the RSB_NUM_THREADS
environment variable will override the number of executing threads specified by OMP_NUM_THREADS
. (See also RSB_IO_WANT_EXECUTING_THREADS).
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
Xp | The input vector array. |
incX | Spacing of vector elements in each input vector array (>=1). |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
Yp | The output array vector. |
incY | Spacing of vector elements in each output vector array (>=1). |
struct rsb_mtx_t* rsb_sppsp | ( | rsb_type_t | typecode, |
rsb_trans_t | transA, | ||
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_trans_t | transB, | ||
const void * | betap, | ||
const struct rsb_mtx_t * | mtxBp, | ||
rsb_err_t * | errvalp | ||
) |
Computes the weighted sum of two sparse matrices, returning a new matrix: Symmetry flags are ignored in this operation.
if transA=RSB_TRANSPOSITION_N
; if transA=RSB_TRANSPOSITION_T
; if transA=RSB_TRANSPOSITION_C
; if transB=RSB_TRANSPOSITION_N
; if transB=RSB_TRANSPOSITION_T
; if transB=RSB_TRANSPOSITION_C
;
typecode | A valid type code for the given (numerical array) input pointer (see matrix_type_symbols_section). |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
transB | Transposition parameter for (see matrix_transposition_flags_section). |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
mtxBp | Valid rsb_mtx_t pointer to matrix representation. |
errvalp | An optional (can be NULL ) pointer to rsb_err_t where the error status will be written to. |
struct
rsb_mtx_t*
) to the newly allocated matrix structure; on error, NULL
.rsb_err_t rsb_spsm | ( | rsb_trans_t | transT, |
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxTp, | ||
rsb_coo_idx_t | nrhs, | ||
rsb_flags_t | order, | ||
const void * | betap, | ||
const void * | Bp, | ||
rsb_nnz_idx_t | ldB, | ||
void * | Cp, | ||
rsb_nnz_idx_t | ldC | ||
) |
Computes , with upper or lower triangular .
if transT=RSB_TRANSPOSITION_N
; if transT=RSB_TRANSPOSITION_T
; if transT=RSB_TRANSPOSITION_C
;
transT | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxTp | Valid rsb_mtx_t pointer to matrix representation. The matrix must be triangular; that is, it must have been allocated with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR flags. |
nrhs | The number of right hand side vectors (cannot be <1 ). |
order | A flag among RSB_FLAG_WANT_COLUMN_MAJOR_ORDER and RSB_FLAG_WANT_ROW_MAJOR_ORDER. For contiguous vector arrays, you probably want RSB_FLAG_WANT_COLUMN_MAJOR_ORDER. |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
Bp | The input vector array. |
ldB | Leading dimension of Bp array. |
Cp | The output vector array. |
ldC | Leading dimension of Cp array. |
rsb_err_t rsb_spsv | ( | rsb_trans_t | transT, |
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxTp, | ||
const void * | Xp, | ||
rsb_coo_idx_t | incX, | ||
void * | Yp, | ||
rsb_coo_idx_t | incY | ||
) |
Computes , with upper or lower triangular . It is allowed to supply same Xp
and Yp
(that is, Xp==Yp
).
if transT=RSB_TRANSPOSITION_N
; if transT=RSB_TRANSPOSITION_T
; if transT=RSB_TRANSPOSITION_C
;
transT | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxTp | Valid rsb_mtx_t pointer to matrix representation. The matrix must be triangular; that is, it must have been allocated with either RSB_FLAG_LOWER_TRIANGULAR or RSB_FLAG_UPPER_TRIANGULAR flags. |
Xp | The input vector array. |
incX | Spacing of vector elements in each input vector array (>=1). |
Yp | The output array vector. |
incY | Spacing of vector elements in each output vector array (>=1). |
–enable-zero-division-checks-on-solve
was specified at configure time, attempts to solve a triangular matrix with zeroes on a diagonal will fail. rsb_err_t rsb_strerror_r | ( | rsb_err_t | errval, |
rsb_char_t * | buf, | ||
size_t | buflen | ||
) |
Writes a textual description of an error code in the specified string buffer. No more than buflen characters will be written (comprehensive of the terminting NUL
character).
errval | A valid error flag value (see rsb_err_t). |
buf | A valid string buffer pointer where to write to. |
buflen | The string buffer length. |
rsb_time_t rsb_time | ( | void | ) |
Returns the current time in seconds. This function is meant to be used for computing wall clock time intervals (e.g.: for benchmarking purposes). The user should not rely on this function for absolute time computations.
rsb_err_t rsb_tune_spmm | ( | struct rsb_mtx_t ** | mtxOpp, |
rsb_real_t * | sfp, | ||
rsb_int_t * | tnp, | ||
rsb_int_t | maxr, | ||
rsb_time_t | maxt, | ||
rsb_trans_t | transA, | ||
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_coo_idx_t | nrhs, | ||
rsb_flags_t | order, | ||
const void * | Bp, | ||
rsb_nnz_idx_t | ldB, | ||
const void * | betap, | ||
void * | Cp, | ||
rsb_nnz_idx_t | ldC | ||
) |
An auto-tuner: optimizes either the matrix instance, the thread count or both for the rsb_spmm operation.
The tuner works by evaluating different instances and working threads variants. The instance leading to faster operation time will be retained and given back to the user in *mtxOpp
. If nrhs==1
and order==RSB_FLAG_WANT_COLUMN_MAJOR_ORDER
, unitary stride vectors are assumed. In case of error, the original input matrix shall be unaffected. It is possible to specify the leading dimensions of Bp
,Cp implicitly, with ldB=0
and ldC=0
: in this case, their values will be computed internally and if Bp!=NULL
,Cp!=NULL, they will be assumed of being sufficiently sized. Values of nrhs<1
will be treated as 1. Bp
, Cp
can be NULL:
temporary vectors will be allocated, used, and deallocated within the tuner. If mtxOpp=NULL
and *tnp!=NULL
the best thread count will be probed for the matrix given in mtxAp
. Please note that if threads only tuning is requested and matrix has too few leaves (see RSB_MIF_LEAVES_COUNT__TO__RSB_BLK_INDEX_T), tuning will not work. If mtxAp==NULL
, then the *mtxOpp
instance will be used; however in this case, if a better instance is found, the original will be destroyed as with rsb_mtx_free(). The case mtxAp!=NULL&&*mtxOpp!=NULL
is illegal and will cause an error.
mtxOpp | Optimal matrix structure pointer will be assigned to *mtxOpp (it may occur that *mtxOpp==mtxAp on output). If mtxOpp is NULL then no data structure optimization will be attempted; rather, only optimal threads search will occur (tnp must be not NULL then). |
sfp | Achieved speedup factor will be written to *sfp (unless sfp==NULL ). |
tnp | If tnp==NULL on input, the current thread count will be utilized. Otherwise, if *tnp>0 , then *tnp will be used as first suggestion in optimal thread count searching. If tnp!=NULL ,on output *tnp will be set to contain the optimal number of threads. Then, the user is expected to set this number of threads using e.g.: RSB_REINIT_SINGLE_VALUE_SET(RSB_IO_WANT_EXECUTING_THREADS,tnp,errval) . Please note that this will affect the whole library operation, not only this matrix. |
maxr | Optimizer rounds max count. If <1 , will be treated as 1; if 0 will be decided automatically. Max is RSB_CONST_MAX_TUNING_ROUNDS. |
maxt | Maximum time (in seconds) per optimization round (does not take in account conversion time). If maxt<0.0 is provided, -ceil (maxt) will be interpreted as number of iterations to check for each operation time sample. If maxt==0.0 is provided, a default choice will be made instead. |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
nrhs | The number of right hand side vectors (cannot be <1 ). |
order | A flag among RSB_FLAG_WANT_COLUMN_MAJOR_ORDER and RSB_FLAG_WANT_ROW_MAJOR_ORDER. For contiguous vector arrays, you probably want RSB_FLAG_WANT_COLUMN_MAJOR_ORDER. |
Bp | The input vector array. If NULL , a temporary, internally allocated copy will be used. |
ldB | Leading dimension of Bp array. |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
Cp | The output vector array. If NULL , a temporary, internally allocated copy will be used. |
ldC | Leading dimension of Cp array. |
Examples:
rsb_err_t rsb_tune_spsm | ( | struct rsb_mtx_t ** | mtxOpp, |
rsb_real_t * | sfp, | ||
rsb_int_t * | tnp, | ||
rsb_int_t | maxr, | ||
rsb_time_t | maxt, | ||
rsb_trans_t | transA, | ||
const void * | alphap, | ||
const struct rsb_mtx_t * | mtxAp, | ||
rsb_coo_idx_t | nrhs, | ||
rsb_flags_t | order, | ||
const void * | Bp, | ||
rsb_nnz_idx_t | ldB, | ||
const void * | betap, | ||
void * | Cp, | ||
rsb_nnz_idx_t | ldC | ||
) |
An auto-tuner: optimizes either the matrix instance, the thread count or both for the rsb_spsm operation.
The tuner works by evaluating different instances and working threads variants. The instance leading to faster operation time will be retained and given back to the user in *mtxOpp
. If nrhs==1
and order==RSB_FLAG_WANT_COLUMN_MAJOR_ORDER
, unitary stride vectors are assumed. In case of error, the original input matrix shall be unaffected. It is possible to specify the leading dimensions of Bp
,Cp implicitly, with ldB=0
and ldC=0
: in this case, their values will be computed internally and if Bp!=NULL
,Cp!=NULL, they will be assumed of being sufficiently sized. Values of nrhs<1
will be treated as 1. Bp
, Cp
can be NULL:
temporary vectors will be allocated, used, and deallocated within the tuner. If mtxOpp=NULL
and *tnp!=NULL
the best thread count will be probed for the matrix given in mtxAp
. Please note that if threads only tuning is requested and matrix has too few leaves (see RSB_MIF_LEAVES_COUNT__TO__RSB_BLK_INDEX_T), tuning will not work. If mtxAp==NULL
, then the *mtxOpp
instance will be used; however in this case, if a better instance is found, the original will be destroyed as with rsb_mtx_free(). The case mtxAp!=NULL&&*mtxOpp!=NULL
is illegal and will cause an error.
mtxOpp | Optimal matrix structure pointer will be assigned to *mtxOpp (it may occur that *mtxOpp==mtxAp on output). If mtxOpp is NULL then no data structure optimization will be attempted; rather, only optimal threads search will occur (tnp must be not NULL then). |
sfp | Achieved speedup factor will be written to *sfp (unless sfp==NULL ). |
tnp | If tnp==NULL on input, the current thread count will be utilized. Otherwise, if *tnp>0 , then *tnp will be used as first suggestion in optimal thread count searching. If tnp!=NULL ,on output *tnp will be set to contain the optimal number of threads. Then, the user is expected to set this number of threads using e.g.: RSB_REINIT_SINGLE_VALUE_SET(RSB_IO_WANT_EXECUTING_THREADS,tnp,errval) . Please note that this will affect the whole library operation, not only this matrix. |
maxr | Optimizer rounds max count. If <1 , will be treated as 1; if 0 will be decided automatically. Max is RSB_CONST_MAX_TUNING_ROUNDS. |
maxt | Maximum time (in seconds) per optimization round (does not take in account conversion time). If maxt<0.0 is provided, -ceil (maxt) will be interpreted as number of iterations to check for each operation time sample. If maxt==0.0 is provided, a default choice will be made instead. |
transA | Transposition parameter for (see matrix_transposition_flags_section). |
alphap | Optional pointer (if NULL , will default to 1) to a numerical value (of the same type as matrix). |
mtxAp | Valid rsb_mtx_t pointer to matrix representation. |
nrhs | The number of right hand side vectors (cannot be <1 ). |
order | A flag among RSB_FLAG_WANT_COLUMN_MAJOR_ORDER and RSB_FLAG_WANT_ROW_MAJOR_ORDER. For contiguous vector arrays, you probably want RSB_FLAG_WANT_COLUMN_MAJOR_ORDER. |
Bp | The input vector array. If NULL , a temporary, internally allocated copy will be used. |
ldB | Leading dimension of Bp array. |
betap | Optional pointer (if NULL , will default to 1) to a numerical value. |
Cp | The output vector array. If NULL , a temporary, internally allocated copy will be used. |
ldC | Leading dimension of Cp array. |
If –enable-zero-division-checks-on-solve
was specified at configure time, attempts to solve a triangular matrix with zeroes on a diagonal will fail.